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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV14072883 hCoV-19/dog/Spain/MD-VISAVET-SUAT_8/2022 EPI_ISL_11580532 RNA virus Severe acute respiratory syndrome coronavirus 2 Spain 2022-01-01 Canis lupus familiaris 29827 2022-03-31 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID VISAVET-SUAT Complutense University of Madrid Barroso-Arévalo Sandra, Sánchez-Morales Lidia, Sánchez-Vizcaíno Jose Manuel VISAVET-SUAT 29827 100.00
OEAV14072884 hCoV-19/dog/Switzerland/SH-UZH-P1841_USZ32_T_1/2021 EPI_ISL_11610926 RNA virus Severe acute respiratory syndrome coronavirus 2 Switzerland 2021-12-11 Canis lupus familiaris 29797 2022-03-30 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Clinical Laboratory, Vetsuisse Faculty, University of Zurich Tatjana Chan, Evelyn Kuhlmeier, Marina Luisa Meli, Regina Hofmann-Lehmann, Christian Beisel, Cecilia Valenzuela Agüí, Chaoran Chen, Ivan Topolsky, Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Katharina Jahn, Rebecca Denes, Ina Nissen, Natascha Santacroce, Elodie Burcklen, Niko Beerenwinkel, Tanja Stadler Department of Biosystems Science and Engineering, ETH Zürich 28749 96.48
OEAV14462188 hCoV-19/dog/Mexico/CPALB32021033/2020 EPI_ISL_11991713 RNA virus Severe acute respiratory syndrome coronavirus 2 Mexico 2020-04-27 Canis lupus familiaris 29891 2022-04-12 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Comisión México-Estados Unidos para la prevención de la fiebre aftosa y otras enfermedades exóticas de los animales (CPA-SENASICA) Navarro-López, Roberto; Rocha-Martínez, Marisol Karina; Solís-Hernández, Mario; Gómez-Romero, Ninnet; Velázquez-Salinas, Lauro; Estrada-Franco, Jorge Guillermo CPA-SENASICA 29891 100.00
OEAV15563639 hCoV-19/dog/Spain/CE-CEU-941000012297834/2021 EPI_ISL_12695538 RNA virus Severe acute respiratory syndrome coronavirus 2 Spain 2021-01-01 Canis lupus familiaris 29609 2022-05-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Clínica Vetererinaria Morey, 51004 Ceuta, Spain. Miguel Padilla-Blanco, Santiago Vega, Luis Enjuanes, Alfonso Morey, Teresa Lorenzo, Clara Marin, Carmen Ivorra, Elisa Maiques, Vicente Rubio, Consuelo Rubio-Guerri Virology Molecular laboratory, Universidad Cardenal Herrera-CEU, Valencia, Spain 27074 91.44
OEAV15793552 hCoV-19/USA/AZ-TG1054435/2021 EPI_ISL_12543430 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-08 Canis lupus familiaris 29762 2022-05-05 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID The Translational Genomics Research Institute (TGen) North Jolene Bowers, Heather Centner, Brett Van Tassel, Chris French, Hayley Yaglom, Darrin Lemmer, Dave Engelthaler The Translational Genomics Research Institute (TGen) North 27946 93.90
OEAV15793553 hCoV-19/USA/AZ-TG1054469/2021 EPI_ISL_12543431 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-12-03 Canis lupus familiaris 29829 2022-05-05 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID The Translational Genomics Research Institute (TGen) North Jolene Bowers, Heather Centner, Brett Van Tassel, Chris French, Hayley Yaglom, Darrin Lemmer, Dave Engelthaler The Translational Genomics Research Institute (TGen) North 29829 100.00
OEAV15793554 hCoV-19/USA/AZ-TG1054485/2021 EPI_ISL_12543432 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-17 Canis lupus familiaris 29399 2022-05-05 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID The Translational Genomics Research Institute (TGen) North Jolene Bowers, Heather Centner, Brett Van Tassel, Chris French, Hayley Yaglom, Darrin Lemmer, Dave Engelthaler The Translational Genomics Research Institute (TGen) North 19090 64.93
OEAV15793555 hCoV-19/USA/AZ-TG1054531/2021 EPI_ISL_12543433 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-17 Canis lupus familiaris 29782 2022-05-05 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID The Translational Genomics Research Institute (TGen) North Jolene Bowers, Heather Centner, Brett Van Tassel, Chris French, Hayley Yaglom, Darrin Lemmer, Dave Engelthaler The Translational Genomics Research Institute (TGen) North 28714 96.41
OEAV15793556 hCoV-19/USA/AZ-TG1054539/2021 EPI_ISL_12543434 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-17 Canis lupus familiaris 29830 2022-05-05 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID The Translational Genomics Research Institute (TGen) North Jolene Bowers, Heather Centner, Brett Van Tassel, Chris French, Hayley Yaglom, Darrin Lemmer, Dave Engelthaler The Translational Genomics Research Institute (TGen) North 29829 100.00
OEAV15793557 hCoV-19/USA/AZ-TG1093575/2021 EPI_ISL_12543435 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-12-10 Canis lupus familiaris 29760 2022-05-05 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID The Translational Genomics Research Institute (TGen) North Jolene Bowers, Heather Centner, Brett Van Tassel, Chris French, Hayley Yaglom, Darrin Lemmer, Dave Engelthaler The Translational Genomics Research Institute (TGen) North 24426 82.08
OEAV15793558 hCoV-19/USA/AZ-TG1099255/2022 EPI_ISL_12543437 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2022-02-11 Canis lupus familiaris 29623 2022-05-05 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID The Translational Genomics Research Institute (TGen) North Jolene Bowers, Heather Centner, Brett Van Tassel, Chris French, Hayley Yaglom, Darrin Lemmer, Dave Engelthaler The Translational Genomics Research Institute (TGen) North 21824 73.67
OEAV15794514 hCoV-19/USA/AZ-TG713679/2021 EPI_ISL_12543439 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-03-16 Canis lupus familiaris 29702 2022-05-05 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID The Translational Genomics Research Institute (TGen) North Jolene Bowers, Heather Centner, Brett Van Tassel, Chris French, Hayley Yaglom, Darrin Lemmer, Dave Engelthaler The Translational Genomics Research Institute (TGen) North 28407 95.64
OEAV16010280 hCoV-19/dog/USA/TX-TAMU-091-22-014776-001/2022 EPI_ISL_13101428 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2022-04-29 Canis lupus familiaris 29752 2022-06-03 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Wisconsin Veterinary Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman National Veterinary Services Laboratories - USDA Diagnostic Virology Laboratory 28862 97.01
OEAV16010496 SARS-CoV-2/Canis lupus/NGA/CV4311.DC8BB.1/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, partial cds; ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes ON564651 RNA viruses Severe acute respiratory syndrome coronavirus 2 Nigeria 2021-07-01 Canis lupus 29800 2022-05-21 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Ogunsanya,O., Sijuwola,E.A., Saibu,F., Oluniyi,P.E., Happi,A. and Happi,C.T. Molecular Biology and Genomics, African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Redeemer's University, Akoda, Ede, Osun State 234001 25367 85.12
OEAV16010497 SARS-CoV-2/Canis lupus/NGA/CV4312.DC8BB.1/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, partial cds; ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; ORF8 protein (ORF8) and nucleocapsid phosphoprotein (N) genes, complete cds; and ORF10 protein (ORF10) gene ON564652 RNA viruses Severe acute respiratory syndrome coronavirus 2 Nigeria 2021-07-22 Canis lupus 29651 2022-05-21 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Ogunsanya,O., Sijuwola,E.A., Saibu,F., Oluniyi,P.E., Happi,A. and Happi,C.T. Molecular Biology and Genomics, African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Redeemer's University, Akoda, Ede, Osun State 234001 22384 75.49
OEAV16010498 SARS-CoV-2/Canis lupus/NGA/CV4313.DC8BB.1/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, partial cds; ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; ORF8 protein (ORF8) gene, complete cds; and nucleocapsid phosphoprotein (N) gene ON564653 RNA viruses Severe acute respiratory syndrome coronavirus 2 Nigeria 2021-07-12 Canis lupus 28961 2022-05-21 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Ogunsanya,O., Sijuwola,E.A., Saibu,F., Oluniyi,P.E., Happi,A. and Happi,C.T. Molecular Biology and Genomics, African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Redeemer's University, Akoda, Ede, Osun State 234001 21973 75.87
OEAV16010499 SARS-CoV-2/Canis lupus/NGA/CV4314.DC8BB.1/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), and ORF3a protein (ORF3a) genes, partial cds; envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; ORF8 protein (ORF8) gene, complete cds; and nucleocapsid phosphoprotein (N) gene ON564654 RNA viruses Severe acute respiratory syndrome coronavirus 2 Nigeria 2021-07-12 Canis lupus 28994 2022-05-21 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Ogunsanya,O., Sijuwola,E.A., Saibu,F., Oluniyi,P.E., Happi,A. and Happi,C.T. Molecular Biology and Genomics, African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Redeemer's University, Akoda, Ede, Osun State 234001 22179 76.50
OEAV16552713 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Canine/IND/A4N_Dog_Gujarat_India/2021 ON248600 RNA viruses Severe acute respiratory syndrome coronavirus 2 India 2021-05-26 Canis lupus familiaris 29816 2022-04-18 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Kumar,D., Vora,D., Antiya,S.P., Patel,S., Sharma,K., Pandit,R., Chauhan,H.C., Joshi,M., Joshi,C.G. and Patel,A.C. Department of Veterianry Microbiology, College of Veterinary Science & A.H., Kamdhenu University, Department of Veterinary Microbiology, College of Veterinary Sci. & A.H., Kamdhenu University 29816 100.00
OEAV17217214 hCoV-19/dog/Spain/CT-IrsiCaixaR009AO3A1/2021 EPI_ISL_13608276 RNA virus Severe acute respiratory syndrome coronavirus 2 Spain 2021-02-18 Canis lupus familiaris 29785 2022-07-02 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID IRTA-CReSA Marc Noguera-Julian, Mariona Parera, Maria Casadellà, Pilar Armengol, Francesc Catala-Moll, Roger Paredes, Bonaventura Clotet J.Rodon, M. Noguera-Julián, L. Fernández-Bastit, J.Segalés, J. Vergara-Alert IrsiCaixa 28073 94.25
OEAV17217215 hCoV-19/dog/Spain/CT-IrsiCaixaR009AO3B1/2021 EPI_ISL_13608277 RNA virus Severe acute respiratory syndrome coronavirus 2 Spain 2021-02-18 Canis lupus familiaris 29801 2022-07-02 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID IRTA-CReSA Marc Noguera-Julian, Mariona Parera, Maria Casadellà, Pilar Armengol, Francesc Catala-Moll, Roger Paredes, Bonaventura Clotet J.Rodon, M. Noguera-Julián, L. Fernández-Bastit, J.Segalés, J. Vergara-Alert IrsiCaixa 29274 98.23
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